Java Object (H5O) Interface

Detailed Description

See also

Objects (H5O), C-API

HDF5 Objects, User Guide

Functions
static int	H5Oclose (long object_id) throws HDF5LibraryException
static synchronized native void	H5Ocopy (long src_loc_id, String src_name, long dst_loc_id, String dst_name, long ocpypl_id, long lcpl_id) throws HDF5LibraryException, NullPointerException
static synchronized native String	H5Oget_comment (long obj_id) throws HDF5LibraryException, IllegalArgumentException
static synchronized native void	H5Oset_comment (long obj_id, String comment) throws HDF5LibraryException
static synchronized native String	H5Oget_comment_by_name (long loc_id, String name, long lapl_id) throws HDF5LibraryException, IllegalArgumentException, NullPointerException
static synchronized native void	H5Oset_comment_by_name (long loc_id, String name, String comment, long lapl_id) throws HDF5LibraryException, NullPointerException
static H5O_info_t	H5Oget_info (long loc_id) throws HDF5LibraryException, NullPointerException
static synchronized native H5O_info_t	H5Oget_info (long loc_id, int fields) throws HDF5LibraryException, NullPointerException
static H5O_info_t	H5Oget_info_by_idx (long loc_id, String group_name, int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native H5O_info_t	H5Oget_info_by_idx (long loc_id, String group_name, int idx_type, int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException
static H5O_info_t	H5Oget_info_by_name (long loc_id, String name, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native H5O_info_t	H5Oget_info_by_name (long loc_id, String name, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native void	H5Olink (long obj_id, long new_loc_id, String new_name, long lcpl_id, long lapl_id) throws HDF5LibraryException, NullPointerException
static long	H5Oopen (long loc_id, String name, long lapl_id) throws HDF5LibraryException, NullPointerException
static int	H5Ovisit (long obj_id, int idx_type, int order, H5O_iterate_t op, H5O_iterate_opdata_t op_data) throws HDF5LibraryException, NullPointerException
static synchronized native int	H5Ovisit (long obj_id, int idx_type, int order, H5O_iterate_t op, H5O_iterate_opdata_t op_data, int fields) throws HDF5LibraryException, NullPointerException
static int	H5Ovisit_by_name (long loc_id, String obj_name, int idx_type, int order, H5O_iterate_t op, H5O_iterate_opdata_t op_data, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native int	H5Ovisit_by_name (long loc_id, String obj_name, int idx_type, int order, H5O_iterate_t op, H5O_iterate_opdata_t op_data, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native boolean	H5Oexists_by_name (long loc_id, String obj_name, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native void	H5Odecr_refcount (long object_id) throws HDF5LibraryException
static synchronized native void	H5Oincr_refcount (long object_id) throws HDF5LibraryException
static long	H5Oopen_by_token (long loc_id, H5O_token_t token) throws HDF5LibraryException
static long	H5Oopen_by_idx (long loc_id, String group_name, int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native void	H5Oflush (long object_id) throws HDF5LibraryException
static synchronized native void	H5Orefresh (long object_id) throws HDF5LibraryException
static synchronized native void	H5Odisable_mdc_flushes (long object_id)
static synchronized native void	H5Oenable_mdc_flushes (long object_id)
static synchronized native boolean	H5Oare_mdc_flushes_disabled (long object_id)
static H5O_native_info_t	H5Oget_native_info (long loc_id) throws HDF5LibraryException, NullPointerException
static synchronized native H5O_native_info_t	H5Oget_native_info (long loc_id, int fields) throws HDF5LibraryException, NullPointerException
static H5O_native_info_t	H5Oget_native_info_by_idx (long loc_id, String group_name, int idx_type, int order, long n, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native H5O_native_info_t	H5Oget_native_info_by_idx (long loc_id, String group_name, int idx_type, int order, long n, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException
static H5O_native_info_t	H5Oget_native_info_by_name (long loc_id, String name, long lapl_id) throws HDF5LibraryException, NullPointerException
static synchronized native H5O_native_info_t	H5Oget_native_info_by_name (long loc_id, String name, int fields, long lapl_id) throws HDF5LibraryException, NullPointerException

Function Documentation

H5Oare_mdc_flushes_disabled()

static synchronized native boolean H5Oare_mdc_flushes_disabled ( long  object_id )

static

H5Oare_mdc_flushes_disabled retrieve the object's "cork" status.

Parameters

object_id

IN: Identifier of the object to be flushed.

Returns

the cork status TRUE if mdc flushes for the object is disabled FALSE if mdc flushes for the object is not disabled

H5Oclose()

static int H5Oclose ( long  object_id ) throws HDF5LibraryException

static

H5Oclose closes the group, dataset, or named datatype specified.

Parameters

object_id

IN: Object identifier

Returns

non-negative on success

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

H5Ocopy()

static synchronized native void H5Ocopy ( long  src_loc_id, String  src_name, long  dst_loc_id, String  dst_name, long  ocpypl_id, long  lcpl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Ocopy copies the group, dataset or named datatype specified from the file or group specified by source location to the destination location.

Parameters

src_loc_id	IN: Object identifier indicating the location of the source object to be copied
src_name	IN: Name of the source object to be copied
dst_loc_id	IN: Location identifier specifying the destination
dst_name	IN: Name to be assigned to the new copy
ocpypl_id	IN: Object copy property list
lcpl_id	IN: Link creation property list for the new hard link

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Odecr_refcount()

static synchronized native void H5Odecr_refcount ( long  object_id ) throws HDF5LibraryException

static

H5Odecr_refcount decrements the hard link reference count for an object.

Parameters

object_id

IN: Object identifier

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

H5Odisable_mdc_flushes()

static synchronized native void H5Odisable_mdc_flushes ( long  object_id )

static

H5Odisable_mdc_flushes corks an object, keeping dirty entries associated with the object in the metadata cache.

Parameters

object_id

IN: Identifier of the object to be corked.

H5Oenable_mdc_flushes()

static synchronized native void H5Oenable_mdc_flushes ( long  object_id )

static

H5Oenable_mdc_flushes uncorks an object, keeping dirty entries associated with the object in the metadata cache.

Parameters

object_id

IN: Identifier of the object to be uncorked.

H5Oexists_by_name()

static synchronized native boolean H5Oexists_by_name ( long  loc_id, String  obj_name, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oexists_by_name is used by an application to check that an existing link resolves to an object. Primarily, it is designed to check for dangling soft, external, or user-defined links.

Parameters

loc_id	IN: File or group identifier
obj_name	IN: Relative path to the object
lapl_id	IN: Link access property list identifier

Returns

Returns TRUE or FALSE if successful

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oflush()

static synchronized native void H5Oflush ( long  object_id ) throws HDF5LibraryException

static

H5Oflush causes all buffers associated with an object to be immediately flushed to disk without removing the data from the cache. object_id can be any named object associated with an HDF5 file including a dataset, a group, or a committed datatype.

Parameters

object_id

IN: Identifier of the object to be flushed.

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

H5Oget_comment()

static synchronized native String H5Oget_comment ( long  obj_id ) throws HDF5LibraryException, IllegalArgumentException

static

H5Oget_comment retrieves the comment for the specified object.

Parameters

obj_id

IN: File or group identifier

Returns

the comment

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

H5Oget_comment_by_name()

static synchronized native String H5Oget_comment_by_name ( long  loc_id, String  name, long  lapl_id  ) throws HDF5LibraryException, IllegalArgumentException, NullPointerException

static

H5Oget_comment_by_name retrieves the comment for an object.

Parameters

loc_id	IN: Identifier of a file, group, dataset, or named datatype.
name	IN: Relative name of the object whose comment is to be set or reset.
lapl_id	IN: Link access property list identifier.

Returns

the comment

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_info() [1/2]

static H5O_info_t H5Oget_info ( long  loc_id ) throws HDF5LibraryException, NullPointerException

static

H5Oget_info retrieves the metadata for an object specified by an identifier.

Parameters

loc_id

IN: Identifier for target object

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_info() [2/2]

static synchronized native H5O_info_t H5Oget_info ( long  loc_id, int  fields  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_info retrieves the metadata for an object specified by an identifier.

Parameters

loc_id	IN: Identifier for target object
fields	IN: Object fields to select

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_info_by_idx() [1/2]

static synchronized native H5O_info_t H5Oget_info_by_idx ( long  loc_id, String  group_name, int  idx_type, int  order, long  n, int  fields, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position.

Parameters

loc_id	IN: File or group identifier
group_name	IN: Name of group, relative to loc_id, in which object is located
idx_type	IN: Type of index by which objects are ordered
order	IN: Order of iteration within index
n	IN: Object to open
fields	IN: Object fields to select
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_info_by_idx() [2/2]

static H5O_info_t H5Oget_info_by_idx ( long  loc_id, String  group_name, int  idx_type, int  order, long  n, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_info_by_idx retrieves the metadata for an object, identifying the object by an index position.

Parameters

loc_id	IN: File or group identifier
group_name	IN: Name of group, relative to loc_id, in which object is located
idx_type	IN: Type of index by which objects are ordered
order	IN: Order of iteration within index
n	IN: Object to open
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_info_by_name() [1/2]

static synchronized native H5O_info_t H5Oget_info_by_name ( long  loc_id, String  name, int  fields, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name.

Parameters

loc_id	IN: File or group identifier specifying location of group in which object is located
name	IN: Relative name of group
fields	IN: Object fields to select
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_info_by_name() [2/2]

static H5O_info_t H5Oget_info_by_name ( long  loc_id, String  name, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_info_by_name retrieves the metadata for an object, identifying the object by location and relative name.

Parameters

loc_id	IN: File or group identifier specifying location of group in which object is located
name	IN: Relative name of group
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_native_info() [1/2]

static H5O_native_info_t H5Oget_native_info ( long  loc_id ) throws HDF5LibraryException, NullPointerException

static

H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier. Native HDF5-specific metadata includes things like object header information and object storage layout information.

Parameters

loc_id

IN: Identifier for target object

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_native_info() [2/2]

static synchronized native H5O_native_info_t H5Oget_native_info ( long  loc_id, int  fields  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_native_info retrieves the native HDF5-specific metadata for an HDF5 object specified by an identifier. Native HDF5-specific metadata includes things like object header information and object storage layout information.

Parameters

loc_id	IN: Identifier for target object
fields	IN: Object fields to select

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_native_info_by_idx() [1/2]

static synchronized native H5O_native_info_t H5Oget_native_info_by_idx ( long  loc_id, String  group_name, int  idx_type, int  order, long  n, int  fields, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object by an index position. Native HDF5-specific metadata includes things like object header information and object storage layout information.

Parameters

loc_id	IN: File or group identifier
group_name	IN: Name of group, relative to loc_id, in which object is located
idx_type	IN: Type of index by which objects are ordered
order	IN: Order of iteration within index
n	IN: Object to open
fields	IN: Object fields to select
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_native_info_by_idx() [2/2]

static H5O_native_info_t H5Oget_native_info_by_idx ( long  loc_id, String  group_name, int  idx_type, int  order, long  n, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_native_info_by_idx retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object by an index position. Native HDF5-specific metadata includes things like object header information and object storage layout information.

Parameters

loc_id	IN: File or group identifier
group_name	IN: Name of group, relative to loc_id, in which object is located
idx_type	IN: Type of index by which objects are ordered
order	IN: Order of iteration within index
n	IN: Object to open
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_native_info_by_name() [1/2]

static synchronized native H5O_native_info_t H5Oget_native_info_by_name ( long  loc_id, String  name, int  fields, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object by location and relative name. Native HDF5-specific metadata includes things like object header information and object storage layout information.

Parameters

loc_id	IN: File or group identifier specifying location of group in which object is located
name	IN: Relative name of group
fields	IN: Object fields to select
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oget_native_info_by_name() [2/2]

static H5O_native_info_t H5Oget_native_info_by_name ( long  loc_id, String  name, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oget_native_info_by_name retrieves the native HDF5-specific metadata for an HDF5 object, identifying the object by location and relative name. Native HDF5-specific metadata includes things like object header information and object storage layout information.

Parameters

loc_id	IN: File or group identifier specifying location of group in which object is located
name	IN: Relative name of group
lapl_id	IN: Access property list identifier for the link pointing to the object (Not currently used; pass as H5P_DEFAULT.)

Returns

object information

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oincr_refcount()

static synchronized native void H5Oincr_refcount ( long  object_id ) throws HDF5LibraryException

static

H5Oincr_refcount increments the hard link reference count for an object.

Parameters

object_id

IN: Object identifier

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

H5Olink()

static synchronized native void H5Olink ( long  obj_id, long  new_loc_id, String  new_name, long  lcpl_id, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Olink creates a new hard link to an object in an HDF5 file.

Parameters

obj_id	IN: Object to be linked.
new_loc_id	IN: File or group identifier specifying location at which object is to be linked.
new_name	IN: Relative name of link to be created.
lcpl_id	IN: Link creation property list identifier.
lapl_id	IN: Access property list identifier.

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oopen()

static long H5Oopen ( long  loc_id, String  name, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oopen opens a group, dataset, or named datatype specified by a location and a path name.

Parameters

loc_id	IN: File or group identifier
name	IN: Relative path to the object
lapl_id	IN: Access property list identifier for the link pointing to the object

Returns

an object identifier for the opened object

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Oopen_by_idx()

static long H5Oopen_by_idx ( long  loc_id, String  group_name, int  idx_type, int  order, long  n, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oopen_by_idx opens the nth object in the group specified.

Parameters

loc_id	IN: File or group identifier
group_name	IN: Name of group, relative to loc_id, in which object is located
idx_type	IN: Type of index by which objects are ordered
order	IN: Order of iteration within index
n	IN: Object to open
lapl_id	IN: Access property list identifier for the link pointing to the object

Returns

an object identifier for the opened object

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	group_name is null.

H5Oopen_by_token()

static long H5Oopen_by_token ( long  loc_id, H5O_token_t  token  ) throws HDF5LibraryException

static

H5Oopen_by_token opens a group, dataset, or named datatype using its object token within an HDF5 file.

Parameters

loc_id	IN: File or group identifier
token	IN: Object's token in the file

Returns

an object identifier for the opened object

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

H5Orefresh()

static synchronized native void H5Orefresh ( long  object_id ) throws HDF5LibraryException

static

H5Orefresh causes all buffers associated with an object to be cleared and immediately re-loaded with updated contents from disk. This function essentially closes the object, evicts all metadata associated with it from the cache, and then re-opens the object. The reopened object is automatically re-registered with the same ID. object_id can be any named object associated with an HDF5 file including a dataset, a group, or a committed datatype.

Parameters

object_id

IN: Identifier of the object to be refreshed.

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

H5Oset_comment()

static synchronized native void H5Oset_comment ( long  obj_id, String  comment  ) throws HDF5LibraryException

static

H5Oset_comment sets the comment for the specified object.

Parameters

obj_id	IN: Identifier of the target object
comment	IN: The new comment.

Exceptions

HDF5LibraryException

Error from the HDF5 Library.

Deprecated:

As of HDF5 1.8 in favor of object attributes.

H5Oset_comment_by_name()

static synchronized native void H5Oset_comment_by_name ( long  loc_id, String  name, String  comment, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Oset_comment_by_name sets the comment for the specified object.

Parameters

loc_id	IN: Identifier of a file, group, dataset, or named datatype.
name	IN: Relative name of the object whose comment is to be set or reset.
comment	IN: The new comment.
lapl_id	IN: Link access property list identifier.

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

Deprecated:

As of HDF5 1.8 in favor of object attributes.

H5Ovisit() [1/2]

static int H5Ovisit ( long  obj_id, int  idx_type, int  order, H5O_iterate_t  op, H5O_iterate_opdata_t  op_data  ) throws HDF5LibraryException, NullPointerException

static

H5Ovisit recursively visits all objects accessible from a specified object.

Parameters

obj_id	IN: Identifier of the object at which the recursive iteration begins.
idx_type	IN: Type of index
order	IN: Order of iteration within index
op	IN: Callback function passing data regarding the object to the calling application
op_data	IN: User-defined pointer to data required by the application for its processing of the object

Returns

returns the return value of the first operator that returns a positive value, or zero if all members were processed with no operator returning non-zero.

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Ovisit() [2/2]

static synchronized native int H5Ovisit ( long  obj_id, int  idx_type, int  order, H5O_iterate_t  op, H5O_iterate_opdata_t  op_data, int  fields  ) throws HDF5LibraryException, NullPointerException

static

H5Ovisit recursively visits all objects accessible from a specified object.

Parameters

obj_id	IN: Identifier of the object at which the recursive iteration begins.
idx_type	IN: Type of index
order	IN: Order of iteration within index
op	IN: Callback function passing data regarding the object to the calling application
op_data	IN: User-defined pointer to data required by the application for its processing of the object
fields	IN: Object fields to select

Returns

returns the return value of the first operator that returns a positive value, or zero if all members were processed with no operator returning non-zero.

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Ovisit_by_name() [1/2]

static synchronized native int H5Ovisit_by_name ( long  loc_id, String  obj_name, int  idx_type, int  order, H5O_iterate_t  op, H5O_iterate_opdata_t  op_data, int  fields, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Ovisit_by_name recursively visits all objects starting from a specified object.

Parameters

loc_id	IN: File or group identifier
obj_name	IN: Relative path to the object
idx_type	IN: Type of index
order	IN: Order of iteration within index
op	IN: Callback function passing data regarding the object to the calling application
op_data	IN: User-defined pointer to data required by the application for its processing of the object
fields	IN: Object fields to select
lapl_id	IN: Link access property list identifier

Returns

returns the return value of the first operator that returns a positive value, or zero if all members were processed with no operator returning non-zero.

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.

H5Ovisit_by_name() [2/2]

static int H5Ovisit_by_name ( long  loc_id, String  obj_name, int  idx_type, int  order, H5O_iterate_t  op, H5O_iterate_opdata_t  op_data, long  lapl_id  ) throws HDF5LibraryException, NullPointerException

static

H5Ovisit_by_name recursively visits all objects starting from a specified object.

Parameters

loc_id	IN: File or group identifier
obj_name	IN: Relative path to the object
idx_type	IN: Type of index
order	IN: Order of iteration within index
op	IN: Callback function passing data regarding the object to the calling application
op_data	IN: User-defined pointer to data required by the application for its processing of the object
lapl_id	IN: Link access property list identifier

Returns

returns the return value of the first operator that returns a positive value, or zero if all members were processed with no operator returning non-zero.

Exceptions

HDF5LibraryException	Error from the HDF5 Library.
NullPointerException	name is null.